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Author: SimBioSys

SimBioSys June 16, 2023 Bioinformatics advances, Publications

Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format

Here, we developed two solutions to communication bottlenecks that speed-up simulation by ∼4-fold for hybrid stochastic-deterministic simulations and by over 100-fold for fully deterministic simulations.

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SimBioSys June 16, 2023 BMC, Publications

Novel computational biology modeling system can accurately forecast response to neoadjuvant therapy in early breast cancer

Here, we perform a study in an independent cohort of early-stage and locally advanced breast cancer patients to forecast tumor response to NAT and assess the stability of a previously validated biophysical simulation platform.

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SimBioSys June 16, 2023 Frontiers, Publications

Next generation immuno-oncology tumor profiling using a rapid, non-invasive, computational biophysics biomarker in early-stage breast cancer

Here, we perform a study in an independent cohort of early-stage and locally advanced breast cancer patients to forecast tumor response to NAT and assess the stability of a previously validated biophysical simulation platform.

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SimBioSys December 20, 2022 SABCS 2022

Validation of prognostic platform to further refine identification High Risk Patients indicated for Chemotherapy Free Treatment in Early-Stage Breast Cancer

We used a novel 2-paramenter pharmacokinetic modeling framework that allows biosignatures to be extracted from dynamic contrast enhanced (DCE) magnetic resonance imaging (MRI) studies that contain 3-6 timepoints spaced 60-90 seconds apart. These parameters, referred to as P1 and P2,…

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SimBioSys December 20, 2022 SABCS 2022

Development of a Novel Imaging Biomarker to Ascertain Responsiveness to Immunotherapy

Currently, a lack of tests to differentiate patients likely to respond to IO vs. poor responders precludes a tailored approach to immunotherapy. Here we describe an imaging biomarker that allows physicians to target breast cancer patients with the highest likelihood…

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SimBioSys December 20, 2022 SABCS 2022

A 3D Visualization and Prediction Device for Breast Cancer Surgeons and their Patients

Despite chemotherapeutic advances, surgery remains a putative treatment modality for breast cancer. The type of surgery chosen, and its ultimate clinical and cosmetic consequences, depends on a surgeon’s ability to accurately assess a tumor’s size, distribution, and position in the…

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SimBioSys December 20, 2022 SABCS 2022

A 3D Visualization Method for Breast Cancer Surgeons and Patients

In order to accurately evaluate the potential success of various surgical options, a surgeon must mentally translate these 2D images into more realistic, 3D image to visualize breast and tumor morphologies.

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SimBioSys December 20, 2022 SABCS 2022

Independent validation of a novel, non-invasive approach to predict pathologic complete response (pCR) in a blinded, prospectively-run single center trial

We developed the TumorScope engine, a software platform that utilizes pretreatment diagnostic data to build a computational tumor model that simulates in vivo tumor characteristics and interactions, incorporating morphology, metabolism, vascularity, and nutrient and drug delivery.

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SimBioSys December 20, 2022 SABCS 2022

pCR Score: A Novel Prognostic Method to Estimate the Predictive Probability of pCR in Early-Stage Breast Cancer Patients.

To drive further utility, we now investigate a pCR score as a continuous outcome (0-100) to establish a prognostic system that evaluates the predictive probability that a patient will achieve pCR with any SOC NAT regimen.

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SimBioSys December 20, 2022 SITC 2022

T-cell metabolic activity is impacted by the nutrient composition within the tumor microenvironment

Our results demonstrated that the local nutrient composition has a dramatic impact on T cell functionality, with fundamental cellular behaviors being significantly impaired by a reduction in key nutrients such as glucose and oxygen.

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Recent Posts

  • Validation of breast cancer quantitation from MRIs: Comparison of an AI-powered software with expert radiologists
  • Breast surgery: art or science? Survey of 36 experienced breast surgical oncologists 
  • SimBioSys Appoints Stacey Stevens as President and CEO 
  • Enabling Precision Surgery: Ricoh 3D for Healthcare and SimBioSys® to Explore Collaboration for Development of AI-Powered Personalized 3D-Printed Models
  • Precision Oncology Innovator SimBioSys® and General Inception Announce Strategic Partnership to Accelerate Cancer Drug Development

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